Index
A
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
P
|
Q
|
R
|
S
|
T
|
V
|
W
A
AA_pos__AA_length (simplevcf.snpeff.SnpEff attribute)
Allele (simplevcf.snpeff.SnpEff attribute)
ALT (simplevcf.Record attribute)
Annotation (simplevcf.snpeff.SnpEff attribute)
Annotation_Impact (simplevcf.snpeff.SnpEff attribute)
C
CALL (simplevcf.Record attribute)
cDNA_pos__cDNA_length (simplevcf.snpeff.SnpEff attribute)
CDS_pos__CDS_length (simplevcf.snpeff.SnpEff attribute)
CHROM (simplevcf.Record attribute)
D
Distance (simplevcf.snpeff.SnpEff attribute)
E
ERRORS (simplevcf.snpeff.SnpEff attribute)
F
Feature_ID (simplevcf.snpeff.SnpEff attribute)
Feature_Type (simplevcf.snpeff.SnpEff attribute)
FILTER (simplevcf.Record attribute)
FORMAT (simplevcf.Record attribute)
G
Gene_ID (simplevcf.snpeff.SnpEff attribute)
Gene_Name (simplevcf.snpeff.SnpEff attribute)
get_contig() (simplevcf.header.Header method)
get_format() (simplevcf.header.Header method)
get_header() (simplevcf.Reader method)
get_header_lines() (simplevcf.header.Header method)
get_info() (simplevcf.header.Header method)
get_samples() (simplevcf.header.Header method)
(simplevcf.Reader method)
H
Header (class in simplevcf.header)
header_contents (simplevcf.header.HeaderLine attribute)
header_description (simplevcf.header.HeaderLine attribute)
header_id (simplevcf.header.HeaderLine attribute)
header_number (simplevcf.header.HeaderLine attribute)
header_tag (simplevcf.header.HeaderLine attribute)
header_type (simplevcf.header.HeaderLine attribute)
HeaderLine (class in simplevcf.header)
HGVS_c (simplevcf.snpeff.SnpEff attribute)
HGVS_p (simplevcf.snpeff.SnpEff attribute)
I
ID (simplevcf.Record attribute)
INFO (simplevcf.Record attribute)
L
line (simplevcf.header.HeaderLine attribute)
M
module
simplevcf
simplevcf.header
simplevcf.snpeff
P
parse() (simplevcf.header.HeaderLine static method)
(simplevcf.Record static method)
(simplevcf.snpeff.SnpEff static method)
parse_header() (simplevcf.header.Header static method)
POS (simplevcf.Record attribute)
Q
QUAL (simplevcf.Record attribute)
R
Rank (simplevcf.snpeff.SnpEff attribute)
Reader (class in simplevcf)
Record (class in simplevcf)
REF (simplevcf.Record attribute)
S
simplevcf
module
simplevcf.header
module
simplevcf.snpeff
module
SnpEff (class in simplevcf.snpeff)
T
to_line() (simplevcf.Record method)
Transcript_BioType (simplevcf.snpeff.SnpEff attribute)
V
vcfopen() (in module simplevcf)
W
write_record() (simplevcf.Writer method)
Writer (class in simplevcf)
simplevcf
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